MRIQC: individual T1w report

Summary

Subject ID: 029_ControlPre.
Date and time: 2018-05-06, 20:34.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.31142969941146126
cnr			4.105479579028615
efc			0.596306425263606
fber			93.2881088256836
fwhm	avg		4.0295700000000005
fwhm	x		3.74757
fwhm	y		4.44738
fwhm	z		3.89376
icvs	csf		0.1866314297342818
icvs	gm		0.480873850829486
icvs	wm		0.3324947194362322
inu	med		1.076866865158081
inu	range		0.3478367447853087
qi	1		0.0019234189659691286
qi	2		0.0007982470874466144
rpve	csf		27.671036957199988
rpve	gm		12.256269069286965
rpve	wm		19.29454810899168
size	x		180
size	y		256
size	z		256
snr	csf		2.5287321486380328
snr	gm		11.835494575837156
snr	total		10.345595316076897
snr	wm		16.672559223755503
snrd	csf		12.558535777919714
snrd	gm		28.404806080900176
snrd	total		28.144123129407472
snrd	wm		43.469027529402524
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	11.723862726403409
summary	bg	mad	15.071535110473633
summary	bg	mean	55.578643798828125
summary	bg	median	51.6441650390625
summary	bg	n	2641171.0
summary	bg	p05	31.55203628540039
summary	bg	p95	91.34200286865234
summary	bg	stdv	21.902742385864258
summary	csf	k	0.445918247695003
summary	csf	mad	113.76252746582031
summary	csf	mean	307.91204833984375
summary	csf	median	288.9114685058594
summary	csf	n	15249.0
summary	csf	p05	151.91092224121093
summary	csf	p95	510.02822265624985
summary	csf	stdv	114.24776458740234
summary	gm	k	0.14202067074763347
summary	gm	mad	54.26343536376953
summary	gm	mean	654.5171508789062
summary	gm	median	653.4578857421875
summary	gm	n	48792.0
summary	gm	p05	565.0603942871094
summary	gm	p95	746.752359008789
summary	gm	stdv	55.211143493652344
summary	wm	k	0.7199868394519888
summary	wm	mad	53.66415786743164
summary	wm	mean	995.8255615234375
summary	wm	median	1000.0131225585938
summary	wm	n	169513.0
summary	wm	p05	886.476611328125
summary	wm	p95	1086.5559326171874
summary	wm	stdv	59.97940444946289
tpm	overlap	csf	0.21657012403011322
tpm	overlap	gm	0.5428496599197388
tpm	overlap	wm	0.5387965440750122
wm2max			0.5516928659147939

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	dcef42b4dc67b7679062e307a9a8f928
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.