MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.31142969941146126
cnr4.105479579028615
efc0.596306425263606
fber93.2881088256836
fwhmavg4.0295700000000005
fwhmx3.74757
fwhmy4.44738
fwhmz3.89376
icvscsf0.1866314297342818
icvsgm0.480873850829486
icvswm0.3324947194362322
inumed1.076866865158081
inurange0.3478367447853087
qi10.0019234189659691286
qi20.0007982470874466144
rpvecsf27.671036957199988
rpvegm12.256269069286965
rpvewm19.29454810899168
sizex180
sizey256
sizez256
snrcsf2.5287321486380328
snrgm11.835494575837156
snrtotal10.345595316076897
snrwm16.672559223755503
snrdcsf12.558535777919714
snrdgm28.404806080900176
snrdtotal28.144123129407472
snrdwm43.469027529402524
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk11.723862726403409
summarybgmad15.071535110473633
summarybgmean55.578643798828125
summarybgmedian51.6441650390625
summarybgn2641171.0
summarybgp0531.55203628540039
summarybgp9591.34200286865234
summarybgstdv21.902742385864258
summarycsfk0.445918247695003
summarycsfmad113.76252746582031
summarycsfmean307.91204833984375
summarycsfmedian288.9114685058594
summarycsfn15249.0
summarycsfp05151.91092224121093
summarycsfp95510.02822265624985
summarycsfstdv114.24776458740234
summarygmk0.14202067074763347
summarygmmad54.26343536376953
summarygmmean654.5171508789062
summarygmmedian653.4578857421875
summarygmn48792.0
summarygmp05565.0603942871094
summarygmp95746.752359008789
summarygmstdv55.211143493652344
summarywmk0.7199868394519888
summarywmmad53.66415786743164
summarywmmean995.8255615234375
summarywmmedian1000.0131225585938
summarywmn169513.0
summarywmp05886.476611328125
summarywmp951086.5559326171874
summarywmstdv59.97940444946289
tpmoverlapcsf0.21657012403011322
tpmoverlapgm0.5428496599197388
tpmoverlapwm0.5387965440750122
wm2max0.5516928659147939

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumdcef42b4dc67b7679062e307a9a8f928
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.